scASprofiler-quantify CLI

The scASprofiler-impute CLI is used to calcluate AS probability

you can generate a AS probability matrix by the command line like this:

scASprofiler-quantify --input-file scASP-scasp_drop_0.1.csv --oudir ./

Options

There are more parameters for setting (scASprofiler-quantify --help always give the version you are using):

parameter settings

Options:
    input-file: Input CSV file containing splice junction data

    outdir: Output directory to save results